Marcus Stoiber, Principal Algorithms Researcher with Oxford Nanopore Technologies, presented an update on modified bases at the Nanopore Community Meeting in Houston. They began describing how modified bases are detected from nanopore sequencing data. Remora detects modified bases on top of base calling. This is an analogy to Remora latching on to bigger fish and […]
Miten Jain from the University of California, Santa Cruz presented at the Nanopore Community Meeting 2021 on “Nanopore sequencing updates using Q20+ and R10.4.” While this may not be the latest technology, I think it is useful to learn about the history and how improvement were made. Jain spoke about the early version of ultra-long […]
What is Nanopore Sockeye? Tonight I watched a session with Sockeye in the title and may finally learn what it does! Eoghan Harrington, a genomic applications fellow at Oxford Nanopore Technologies, presented at London Calling 2022 on “Sockeye: nanopore-only demultiplexing of single-cell reads.” They explained that there has been an explosion of single-cell applications and […]




