quantification

May 3, 2024
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections, sequencing

Obtaining DNA from the Fever Tree

Vania Costa from Oxford Nanopore Technologies has recorded several Master Classes and sessions with ONT. I watched the London Calling 2019 session “The fever tree: extracting and preparing the DNA of Cinchona pubescens.” This plant produces quinine that is used for malaria and fever treatment. The team wanted to sequence the Cinchona genome to learn […]

May 30, 2023
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections, sequencing, Softwares

Bambu for Transcript Discovery

Andre Sim from the Genome Institute of Singapore (A*STAR) in Singapore spoke at the Nanopore Community Meeting 2021 about “Bambu – generating context-aware transcriptomes with Oxford Nanopore long-reads.” What a cool name! Sim explained that RNA sequencing technologies have evolved, but reference annotation for transcript analysis has remained relatively unchanged. Sim noted that fragments could […]

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quantification

Obtaining DNA from the Fever Tree

Bambu for Transcript Discovery

Understanding Alternative Splicing with Blessy R Package

Advancements in Antisense Oligonucleotide Design

Ultra-Fast Classifiers for Pediatric Tumors: Insights from Lennart Kester