Why

Creating Field Laboratories for Conservation Efforts

Tonight I watched a five-minute Oxford Nanopore Technologies London Calling 2022 session by Mrinalini Erkenswick Watsa and titled “Genomics in the jungle: a field laboratory success story.” Mrinalini Erkenswick Watsa is at the San Diego Zoo Wildlife Alliance and is a field scientist working on conservation. They spoke about the need to assess populations pre […]
Read more

Dorado is Here!

The Dorado basecaller has been on my mind and appearing in different Nanopore resources. Tonight I watched Mike Vella, Director of Machine Learning Operations at Oxford Nanopore Technologies, present an update on Dorado at the Nanopore Community Meeting 2022. Vella spoke about why we need another basecaller, as Nanopore has Bonito and Guppy. Vella explained […]
Read more

NAb-seq to Confirm Antibodies

Kathleen Zeglinski from the Walter and Eliza Hall Institute of Medical Research in Australia presented the ten minute recorded session entitled “NAb-seq: an accurate, rapid, and cost-effective method for antibody long-read sequencing in hybridoma cell lines and single B cells” at the Nanopore Community Meeting 2022. Zeglinski explained that hybridomas and B cells are common […]
Read more

The Mortino Genome

Karla Estefania Rojas Lopez presented at the Nanopore Community Meeting 2022 a ten-minute session entitled “Draft genome of mortino (Vaccinium florib), a wild berry species of the Andean paramo.” Rojas Lopez works at the Universidad de San Francisco de Quito in Ecuador. This is the second session I watch presented by a researcher from this […]
Read more

The Remora Update

Marcus Stoiber, a Principle Algorithms Researcher with Oxford Nanopore Technologies, presented at the Nanopore Community Meeting 2022 the “Nanopore modified base update.” Stoiber explained Oxford Nanopore sequencing allows for powerful epigenetics research because it can “directly detect methylation with high reproducibility and low bias.” You can sequence native DNA and RNA to assess modification. The […]
Read more

Learning to Troubleshoot by Exploring the Capabilities of Adaptive Sampling

Continuing with Devin M. Drown’s work, today I watched their Nanopore Community Meeting 2022 session entitled “Portable genomics hackathon for pathogen detection: a practical application of adaptive sampling to engage undergraduate learning.” Drown is at the University of Alaska Fairbanks. Drown explained that the MinION can be used to engage students in problem-solving and applications […]
Read more

DART and VolTRAX

Danielle Wrenn from the Institute of Artic Biology at the University of Alaska Fairbanks presented at the Nanopore Community Meeting 2022 on “DART: a toolbox for the rapid detection of antibiotic resistance.” Wrenn acknowledged the 2022 Genomics Hackathon in January 2022. They used Nanopore and adaptive sampling. Wrenn explained that DART’s purpose is “the rapid […]
Read more

SLOW5 for Indigenous Genomics

Andre Reis from the Garvan Institute of Medical Research in Australia presented at the Nanopore Community Meeting 2022 on “A long-read nanopore sequencing platform for Indigenous genomics.” Their efforts to increase efforts to increase representation of Indigenous people in Australia. Reis spoke about indigenous Australians and the lack of representation in current catalogues. Thus, there […]
Read more

Alignments and Assemblies

We began working with the VolTRAX2 today. I’m excited to use it for library preps along with the Miroculus Miro. Tonight I watched the NCM 2022 Masterclass session by Matt Attreed on “How to generate and call variants.” Attreed is a technical applications scientist (bioinformatics) with Oxford Nanopore Technologies. They began by providing an introduction […]
Read more

Supporting Teachers to Create Better Learning Experiences Online

Tonight I watched the QM recording for the session entitled “Student Connection and Rapport in the Virtual Environment,” presented by Lisa Pizzuto, Program Specialist/Coordinator at Fulton County Schools. Pizzuto has been teaching online for seventeen years! Pizzuto’s objective was to share ideas for how we can personalize a generic course and develop connections with students. […]
Read more
Press ESC key to close search