adaptive sampling

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PromethION Power!

Tonight I watched the Nanopore Community Meeting: Singapore 2023 session entitled “Product demo: Anyone and anything: unleashing the power of PromethION for human genomics to conservation.” Dan Fordham from Strategic Product Management, Oxford Nanopore Technologies (ONT), spoke about the capabilities of human sequencing from extraction to data. They also explained the Org.one program and how […]
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NCM Singapore 2023 Applications Update

Tonight I watched Dan Turner, SVP of Applications at Oxford Nanopore Technologies (ONT) give an update from the applications team at the Nanopore Community Meeting in Singapore. Turner talked about the applications team with researchers and groups in Singapore, the UK, and a couple other locations. Turner focused on Nanopore use for Pharmacogenomics (PGx). They […]
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Targeted Sequencing Session Takeaways

Tonight I watched the entire Targeted sequencing showcase from London Calling 2023. The first panelist was Lukas Wellguny, a Ph.D. student from EMBL-EBI in the UK. Their presentation title was “Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design.” They take data from the sequencer and incorporate a model to derive uncertainty scores at […]
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Improved Pharmacogenomics with Adaptive Sampling

Tonight I watched the London Calling 2023 session entitled “Advancing targeted haplotyping in pharmacogenomics using adaptive sampling.” Koen Deserranno from Ghent University in Belgium spoke about their research. They are a pharmacist by training and are interested in pharmacogenomics (PGx): personalization of drug therapy based on genomic sequences of the individual. Deserranno spoke about how […]
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Dynamic Adaptive Sampling

Tonight I continued watching the London Calling 2023 Showcase Stage recordings for sessions on targeted sequencing. The speaker was Lukas Weilguny a Ph.D. student from the EMBL-EBI in the UK. The title of the session was “Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design.” They worked on a model that takes the sequencing […]
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A Bed File to Create a Molecular Diagnostic Panel for Germline Cancer Predisposition

Tonight I continued watching the London Calling 2023 targeted sequencing showcase. In the four-minute recording entitled “The potential use of nanopore sequencing for molecular diagnosis of germline cancer predisposition,” Romain Boidot from the Centre Georges-François Leclerc in France spoke about their use of Oxford Nanopore Technologies (ONT) for molecular diagnosis and sequencing. Their current analysis […]
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Adaptive Sampling for In-depth Amniotic Infection Analyses

One of the London Calling 2023 Showcase Stage sessions was on Targeted Sequencing. Tonight, i watched the four-minute recording entitled “Rapid identification of bacterial invasion: full-length 16S or adaptive sampling?” The title intrigued me! I am waiting for the release of the updated 16S amplicon kit. There were several panelists and Thidathip Wongsurawat from the […]
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Using the PromethION for Human Genomics

The London Calling 2023 “Human genomics – from targeted to whole-genome sequencing” showcase recording is fifteen minutes long and highlights applications. Rachel Rubinstein, a technical product manager at Oxford Nanopore Technologies (ONT) shared various applications from targeted and whole genome de novo assembly. They spoke about the PromethION line of sequencing which can produce up […]
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