Tonight I continued watching the PAG Industry Workshop offered by Oxford Nanopore Technologies. Sean Prosser from the University of Guelph presented “From pandemic preparedness to planetary biodiversity: ONT enables targeted amplicon sequencing at massive scale.” Prosser noted that there are almost 35,000 amplicon-based genetic tests available in the US per year. Prosser also noted that […]
Gabriela Pozo from the University of San Francisco de Quito in Ecuador presented at the Nanopore Community Meeting in Boston. The session’s title was “Obtaining reference genomes of emblematic and endangered Ecuadorian species.” Pozo noted that Ecuador is one of the seventeen megadiverse countries globally. However, conservation efforts are also needed. Genomics, noted Pozo, can […]
The Org. One program is fascinating. I would love to be involved. Tonight, I watched the London Calling 2024 session titled “Org.one to 10.” Kara Dicks, Program Manager at Conservation Genomics with Org.one, spoke about the biodiversity crisis. The Org.one program supports local sequencing. The program has supported over ninety projects. Participants receive kits and […]
The last London Calling 2024 studio interview recording was on equity and accessibility in science. Zoe McDougall asked speakers after the day what were the highlights. Ewan Birney from EMBL-EBI was excited about the impact sequencing is having in the clinic. Jasdeep Ghataora from the University of Bristol in the UK also spoke about the […]
Mrinalini Watsa from the San Diego Zoo Wildlife Alliance presented at London Calling 2024 a session titled “Into the unknown: portable sequencing empowers global conservation genomics.” I believe Watsa presented at a previous London Calling. They spoke about biodiversity loss and how we likely don’t know the true diversity. Watsa presented examples of amphibian genomic […]
Cheryl L. Ames from the US Naval Research Laboratory presented at London Calling 2019 on “Field-forward sequencing with Oxford Nanopore technology – a strategy to establish the upside-down mangrove jellyfish Cassiopea xamachana as a bioindicator.” They emphasized the biodiversity of the ocean is largely unexplored… and also threatened by climate change and overfishing. Environmental DNA […]
The London Calling 2021 session “CanSeq150: high-resolution genomic sequencing and assembly of 150 Canadian species” caught my attention today. Jahanshah Ashkani from Canada’s Michael Smith Genome Sciences Center was the speaker. The goal is to save Canada’s rich biodiversity by sequencing unique species. Loss of biodiversity is an issue: there are over 700 species at […]
I am starting to watch older Oxford Nanopore Technologies (ONT) videos to prepare background information for the course we are developing. Tonight, I watched a session by Rob Harbert from Stonehill College. The title of the presentation was “Monitoring plant biodiversity in aquatic eDNA with low-cost Oxford Nanopore Flongle sequencing.”They used the Flongle for metabarcoding. […]
The London Calling 2023 showcase stage on conservation included a four-minute recorded session that I watched tonight. Phoebe Oldach from Basecamp Research spoke about “Building a comprehensive knowledge graph of novel proteins with long-read metagenomic sequencing and global partnerships.” They began by describing the field of identifying new proteins. Oldach explained that there is a […]
Continuing with London Calling 2022 videos, tonight I watched the session with Glen Gowers & Bupe Mwambingu from Basecamp Research. They spoke about “Responsible Exploration of our planet’s biodiversity towards discovery-enabled biodesign.” This was a showcase presentation with a few slides and and questions from the audience. Gowers is the cofounder of Basecamp Research. Mwambingu […]