Nanopore

February 12, 2023
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections, sequencing, Softwares

Rapid Leukemia Subtype Classification with Nanopore

Melanie Sagniez from the CHU Sainte-Justine Research Centre in Canada presented on “Rapid leukemia classification using nanopore sequencing” as part of the Nanopore Community Meeting 2022. This ten-minute session described part of their Ph.D. project research. They first spoke about pediatric leukemia and the current diagnostic process. I didn’t realize that the process takes on […]

February 3, 2023
By Carlos C. Goller
Oxford Nanopore Technologies, Presentations & Talks, Reflections

Influenza WGS Surveillance and Direct RNA Sequencing of Brain Samples!

Tonight I watched two short Nanopore Community Meeting 2022 recordings. I started with Sarah Scott from the the Minnesota Public Health Laboratory, USA who presented on the “Exploration of Oxford Nanopore long-read sequencing to contribute to influenza surveillance at the state level.” Scott is an APHL and CDC Fellow. Scott explained that genomic surveillance of […]

January 31, 2023
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections, Why

The Mortino Genome

Karla Estefania Rojas Lopez presented at the Nanopore Community Meeting 2022 a ten-minute session entitled “Draft genome of mortino (Vaccinium florib), a wild berry species of the Andean paramo.” Rojas Lopez works at the Universidad de San Francisco de Quito in Ecuador. This is the second session I watch presented by a researcher from this […]

January 26, 2023
By Carlos C. Goller
Diversity, Oxford Nanopore Technologies, Reflections, Softwares, Undergraduate Research, Website, Why

DART and VolTRAX

Danielle Wrenn from the Institute of Artic Biology at the University of Alaska Fairbanks presented at the Nanopore Community Meeting 2022 on “DART: a toolbox for the rapid detection of antibiotic resistance.” Wrenn acknowledged the 2022 Genomics Hackathon in January 2022. They used Nanopore and adaptive sampling. Wrenn explained that DART’s purpose is “the rapid […]

January 25, 2023
By Carlos C. Goller
Diversity, Oxford Nanopore Technologies, Presentations & Talks, QM, Reflections, sequencing

Sequencing FCGR

Sarah Frampton from the University of Southampton, UK spoke at the Nanopore Community Meeting 2022 on “Shinning a light on the FCGRs: deconvoluting their challenging (epi)genomic organisation and consequences in immune oncology research.” Frampton is a Ph.D. student and spoke about monoclonal antibodies and their therapeutic potential. The Fc gamma receptors, Frampton explained, are important […]

January 20, 2023
By Carlos C. Goller
Delftia, Presentations & Talks, Reflections, sequencing, Softwares, Undergraduate Research, Website, Why, Workshop

Alignments and Assemblies

We began working with the VolTRAX2 today. I’m excited to use it for library preps along with the Miroculus Miro. Tonight I watched the NCM 2022 Masterclass session by Matt Attreed on “How to generate and call variants.” Attreed is a technical applications scientist (bioinformatics) with Oxford Nanopore Technologies. They began by providing an introduction […]

September 28, 2022
By Carlos C. Goller
Academic Development, Articles, Constructivism, Course Design, Discussions, Information Literacy, Instructor Behaviors, Integrative Thinking, Online Learning, Open Pedagogy, Pedagogy, Presentations & Talks, Reflections, Service Learning, Student groups, Wellbeing, Workshop

Microbial Ecology and Characterization

Tonight I watched “Digging in the Dirt: A Novel CURE in the Race Against Antibiotic Resistance” by Kathleen Boyle, Abigail Multerer, and Marion Toscano from Mount Mary University in Milwaukee, WI. Mount Mary is a Catholic women’s liberal arts university established in 1913. It is designated as an HSI: Hispanic-serving Institution. In 2021 they were […]