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The Remora Update

Marcus Stoiber, a Principle Algorithms Researcher with Oxford Nanopore Technologies, presented at the Nanopore Community Meeting 2022 the “Nanopore modified base update.” Stoiber explained Oxford Nanopore sequencing allows for powerful epigenetics research because it can “directly detect methylation with high reproducibility and low bias.” You can sequence native DNA and RNA to assess modification. The […]
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DART and VolTRAX

Danielle Wrenn from the Institute of Artic Biology at the University of Alaska Fairbanks presented at the Nanopore Community Meeting 2022 on “DART: a toolbox for the rapid detection of antibiotic resistance.” Wrenn acknowledged the 2022 Genomics Hackathon in January 2022. They used Nanopore and adaptive sampling. Wrenn explained that DART’s purpose is “the rapid […]
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Planning Nanopore Sequencing Experiments

Anupama Chandramouli presented the NCM 2022 Oxford Nanopore Technologies masterclass entitled “How to get started with nanopore sequencing and plan your experiment.” Chandramouli is a Field Application Scientist for the North East Region, Americas with Oxford Nanopore Technologies. They described the process starting with extraction of nucleic acids. Chandramouli explained that the nanopores they use […]
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Alignments and Assemblies

We began working with the VolTRAX2 today. I’m excited to use it for library preps along with the Miroculus Miro. Tonight I watched the NCM 2022 Masterclass session by Matt Attreed on “How to generate and call variants.” Attreed is a technical applications scientist (bioinformatics) with Oxford Nanopore Technologies. They began by providing an introduction […]
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A Collection of Library Prep Options for Nanopore

Yan Yang from the Oxford Nanopore Technologies Technical Services North America West Coast Team, presented the NCM 2022 Masterclass “How to select the right library preparation workflow for your experiment.” Yang explained how Nanopore DNA/RNA sequencing works as the nucleic acid is passed through a nanopore and electrical signals are interpreted into sequence data. Yang […]
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Considerations for High-quality DNA and RNA for Oxford Nanopore Sequencing

Tonight I started watching Oxford Nanopore Technologies NCM 2022 Masterclasses. The first recording I watched was by Vania Costa on “How to extract high-quality DNA and RNA.” They spoke about considerations for different fragment lengths. For example, you may want long and ultra-long DNA fragments for assembly. However, for cell-free DNA sequencing you are likely […]
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Modifying the CREATE Strategy and Evaluating Learning

The JMBE Live recording I watched today was Stanley Lo’s presentation on “A modified CREATE Intervention Improves Student Cognitive and Affective Outcomes.” Lo talked about his journey in biology education which includes a Ph.D. in Biochemistry, a postdoc in biochemistry, and a postdoc in learning sciences. Lo taught high school too! Lo is now an […]
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The Road to Authenticity through a Pressbooks Resource

Linda Facchini from The Teaching and Learning Centre at Seneca College presented at the Virtual Institute on Alternative Assessment in Higher Education on November 23, 2022. Seneca is in Toronto, Canada. The title of the session was “Road to Authenticity.” Seneca has multiple campuses with diverse programs. They offer diplomas, certificates, bachelors degrees… in-person, hybrid, […]
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Lessons and Resources from CourseSource

Tonight I watched the ASMCUE 2022 session entitled “Inspiring Evidence-Based Teaching Innovations in Biology Classrooms with the Journal CourseSource.” Jenny Knight, the Editor in Chief at the University of Colorado Boulder, presented this session about CourseSource. I attended this session live, and likely missed key information! There are 39 editors, 12 advisory board members, and […]
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A CURE with Culturomics and Teamwork

I realized I had skipped a Microbrew session! So, tonight I watched the ASMCUE 2022 microbrew entitled “Microbrew. MicroCURE – A Hybrid, Team Approach to Course-based Research Experiences.” Michael LaMontagne and Caroline Kmiecik teach this course-based undergraduate research experience (CURE) at the University of Houston Clear Lake. The student learning goals LaMontagne stated were primary […]
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