Sebastian Lunk from the Victorian Clinical Genetics Services (VCGS) in Australia spoke at London Calling 2025 on “Long-read sequencing and adaptive sampling solve complex diagnostic conundrums.” VCGS is a not-for-profit subsidiary of Murdoch Children’s Hospital with forty years of clinical genetic service delivery and 20,000 diagnostic tests performed annually. With 330 staff, they have the […]
Dr. Anna Smielewska, a consultant virologist in the UK, spoke at ESCMID Global about 16S rRNA sequencing in healthcare settings. The title of the session was “Implementing portable, real-time 16S rRNA sequencing in the healthcare sector enhances antimicrobial stewardship.” Smielewska works with the Liverpool University Hospitals, several hospitals with a broad range of cases. The […]
Tonight I watched the Oxford Nanopore Technologies (ONT) PAG Industry Workshop session titled “A single-platform solution for plant de novo genome assembly.” Jeannie Mounger, a field applications scientist with ONT, was the presenter. They noted that for plant genome assembly there are several considerations. Plant genome size varies greatly: from Mb to Gb. Polyploidy varies […]
Drs. Sharleen Flowers and Stephanie Gardner presented at JMBE Live! on September 29, 2023. Rachel Horak moderated the session. The title of the session was “Here Is the Biology, Now What is the Mechanism? Investigating Biology Undergraduates’ Mechanistic Reasoning within the Context of Biofilm Development.” Gardner spoke about the challenges of understanding complex biological systems. […]
Tonight I watched another JMBE Live session with Greg Phillips from the University of Georgia and Nancy Boury from Iowa State University. Stanley Maloy, Editor in Chief of JMBE, was the moderator. Maloy spoke about how this Curriculum article revisits the Central Dogma. Boury and Phillips were together for several years at Iowa State. The […]
I am happy to have found the JMBE YouTube playlist I had forgotten about! Tonight I watched the session on “CURES increase students’ scientific self-efficacy, scientific identity, and self-assessed skills.” Grace Borlee and Carolina Mehaffy were the guests, and the session was moderated by Stanley Maloy, JMBE Editor-in-chief. Mehaffy is at Colorado State University along […]
What a long day! Tonight I continued watching the session on Exploring Plant Gene Linkages using Random Walk with Restart Tools. The apps were described and how the Random Walk with Restart tools can be used to explore networks. The output can be the top one hundred genes visualized in a network. The starting seed […]
I continued watching the KBase Educators Orientation from December 2024. Ellen Dow from KBase provided an overview of the narratives in the KBase Educators Org. Dow shared how students, for example, can import data from other narratives. This is a feature I did not know about! RAST and Prokka are two annotation tools available. Dow […]
Tonight I watched Elisha M. Wood-Charlson, KBase User Engagement Lead, present at the LISA workshop. Wood-Charlson spoke about publishing with KBase and the “research data lifecycle.” The cycle of creating and managing data with FAIR principles in mind. Wood-Charlson noted that 2022 was declared the year of open science and mandates were created to promote […]
Continuing with the LISA workshop, tonight I watched another session. This one was by a postdoc, Andrew Wilson, at Pacific Northwest National Laboratory. They have been working on plasmid and microbe sequencing. The title of the session was “Leveraging Long Reads for Synthetic Biology.” Wilson and team are using Gibson assembly and synthetic biology techniques. […]