Publishing

Isopod: Detecting Differential Transcript Usage in Long-Read Single-Cell Data

Michael Nakai from the Peter MacCallum Cancer Centre in Australia spoke at London Calling 2024. The session title was “Isopod: detecting differential isoform usage from long-read single-cell data.” Nakai is a Ph.D. candidate and explained why we are interested in isoforms and splicing events. With long-read sequencing, information about splicing and different isoforms can be […]
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Exploring Plant Biodiversity with the Flongle

I am starting to watch older Oxford Nanopore Technologies (ONT) videos to prepare background information for the course we are developing. Tonight, I watched a session by Rob Harbert from Stonehill College. The title of the presentation was “Monitoring plant biodiversity in aquatic eDNA with low-cost Oxford Nanopore Flongle sequencing.”They used the Flongle for metabarcoding. […]
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NAb-seq to Confirm Antibodies

Kathleen Zeglinski from the Walter and Eliza Hall Institute of Medical Research in Australia presented the ten minute recorded session entitled “NAb-seq: an accurate, rapid, and cost-effective method for antibody long-read sequencing in hybridoma cell lines and single B cells” at the Nanopore Community Meeting 2022. Zeglinski explained that hybridomas and B cells are common […]
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New Diagnostic Approaches Using Nanopore Sequencing

Professor Laurent Mesnard from from the Medecine Sorbonne Universite spoke at the Nanopore Community Meeting 2022 about “Rapid genomic analysis for thrombotic microangiopathies (TMA) diagnosis.” Their approach combined Nanopore adaptive sampling, EPI2ME, and SeqOne approach. They described TMA and the need to detect early. Mesnard explained that the biggest challenge for TMA is early intervention. […]
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Planning Nanopore Sequencing Experiments

Anupama Chandramouli presented the NCM 2022 Oxford Nanopore Technologies masterclass entitled “How to get started with nanopore sequencing and plan your experiment.” Chandramouli is a Field Application Scientist for the North East Region, Americas with Oxford Nanopore Technologies. They described the process starting with extraction of nucleic acids. Chandramouli explained that the nanopores they use […]
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Quantifying Talk-Turns and Graphing Group Dynamics

The Online with LSE Webinar series recording I watched tonight was one I missed. It was from three years ago and entitled “Applying Graph Theory to Examine the Dynamics of Student Discussions in Small-Group Learning” with Dr. Stanley Lo. The session began with a diagram of the inputs and outputs affecting group work. The study […]
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A Course on Feedback, Mentoring, and Science Communication

Dr. Diedra Wrighting presented at the Online with LSE webinar series on “Teaching Undergrads to Communicate Science, Cultivate Mentoring Relationships, and Navigate Science Culture.” Wrighting is Executive Director of the ADVANCE Office of Faculty Development at Northeastern University in Boston. They emphasized the importance of mentoring and obtained funding to create a two-credit course in […]
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Resistance to Implementing Diversity Interventions in the Classroom

Tonight I watched the Online with LSE Webinar recording for the session “Diversity Interventions in the Classroom: From Resistance to Action.” Dr. Dustin Thoman from San Diego State University is a social psychologist that works in science education along with Dr. Melo-Jean Yap, Dr. Felisha Herrera Villareal, and Dr Jessi Smith (UCCS). As with other […]
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Interpreting and Communicating in Undergraduate Research Experiences

To end the year, I watched the JMBE Live session with Laura E. Ott entitled “Supporting Deaf Students in Undergraduate Research Experiences.” This session was recorded over a year ago.Ott was at UMBE when she started this work and now has been at UNC for several years. She began by sharing the statistics on Deaf […]
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Learning from Struggles and Frustration

Justin DiAngelo from Penn State Berks, Amy Hark from Muhlenberg College, Anne Rosenwald from Georgetown University, and Matt Wawersik from William & Mary presented at JMBE Live over a year ago. I finally had a chance to watch this recording. They are all authors on the “Facilitating Growth through Frustration: Using genomics Research in a […]
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