improvement

June 5, 2024
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections, sequencing, Softwares

Advancements in Multi-Omics and Precision Health at London Calling 2024

The studio interviews at London Calling 2024 I watched tonight focused on clinical and translational applications. Zoe McDougall asked the three interviewees about the highlights of the updates talk. Ewan Birney director of EMBL-EBI in the UK spoke about the quality updates. Justin O’Sullivan from Liggins Institute at the University of Auckland in New Zealand […]

February 11, 2024
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections, sequencing, Softwares

Assembly of A Model of Plant Evolution

Issa Diop from the University of Zurich in Switzerland presented at London Calling 2021 on “Chromosomal-scale assembly of the liverwort Marchantia paleacea.” Diop discussed chloroplasts and endosymbionts before introducing Marchantia as a model of plant evolution. Marchantia has a haploid-dominant life cycle with a genome size of 280 Mbp. There are eight autosomes and 1 […]

May 25, 2023
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections, sequencing

Improving Nanopore Sequencing Chemistries

Miten Jain from the University of California, Santa Cruz presented at the Nanopore Community Meeting 2021 on “Nanopore sequencing updates using Q20+ and R10.4.” While this may not be the latest technology, I think it is useful to learn about the history and how improvement were made. Jain spoke about the early version of ultra-long […]

February 27, 2023
By Carlos C. Goller
Oxford Nanopore Technologies, Reflections

Metagenomic Binning Considering Modifications

Soren Heidelbach spoke at the Nanopore Community Meeting 2022 about “Developing new bioinformatics methods to identify modifications from nanopore sequencing.” Heidelbach is from Aalborg University, Denmark. They did metagenomic binning: grouped contigs based on information from k-mers and coverage and also considered modification motifs. Their modification of metagenomic binning was to include base modification as […]

January 13, 2023
By Carlos C. Goller
Academic Development, Accessibility and UDL, Constructivism, Course Design, Online Learning, Pedagogy, QM, Reflections

Fifty QM Course Reviews

Paula McDougald from Virtual Arkansas and Dr. Brandie Benton (Virtual Arkansas) presented a QM session I watched tonight entitled “My Circus and My Monkeys: Sharing What We’ve Learned Through Simultaneous QM Reviews.” Virtual Arkansas is funded through the Department of Education to provide supplemental instruction in the state. They have 130 teachers and students from […]

January 12, 2023
By Carlos C. Goller
Academic Development, Accessibility and UDL, Course Design, Instructor Behaviors, Online Learning, QM, Reflections, Why

Supporting Teachers to Create Better Learning Experiences Online

Tonight I watched the QM recording for the session entitled “Student Connection and Rapport in the Virtual Environment,” presented by Lisa Pizzuto, Program Specialist/Coordinator at Fulton County Schools. Pizzuto has been teaching online for seventeen years! Pizzuto’s objective was to share ideas for how we can personalize a generic course and develop connections with students. […]

December 29, 2022
By Carlos C. Goller
Academic Development, Articles, Constructivism, Course Design, DBER and SoTL, Discussions, Diversity, Instructor Behaviors, Pedagogy, Podcasts, Publishing, Reflections, Softwares, Student groups, Website

Modifying the CREATE Strategy and Evaluating Learning

The JMBE Live recording I watched today was Stanley Lo’s presentation on “A modified CREATE Intervention Improves Student Cognitive and Affective Outcomes.” Lo talked about his journey in biology education which includes a Ph.D. in Biochemistry, a postdoc in biochemistry, and a postdoc in learning sciences. Lo taught high school too! Lo is now an […]

December 27, 2022
By Carlos C. Goller
Academic Development, Books, Constructivism, DBER and SoTL, Delftia, Discussions, Diversity, Information Literacy, Instructor Behaviors, Pedagogy, Reflections, Service Learning, UDL, Why

Swabs and Microbes in the Second Grade Classroom

The JMBE Live session I watched tonight was entitled “Microscopic Communities: Interdisciplinary Exploration of Microbes in the Classroom” and presented by Dr. Jennifer Surtees and Dr. Sandra K. Small from the University of Buffalo. They are both part of the Genome, Environment and Microbiome (GEM) program that aims to integrate research, education, and engagement. GEM […]

December 23, 2022
By Carlos C. Goller
Academic Development, Accessibility and UDL, Articles, Constructivism, DBER and SoTL, Discussions, Instructor Behaviors, Online Learning, Pedagogy, Publishing, Reflections, Why

Creating the MHSCI

Tonight I watched the ASM JMBE Live session recording with Heather Seitz and Andrea Rediske. The title of the session, recorded on December 10, 2021, was “Impact of COVID-19 curricular shifts on learning gains on a a Concept Inventory.” Their Microbiology for Health Sciences Concept Inventory (MHSCI) is very useful and described in JMBE. Rediske […]

December 21, 2022
By Carlos C. Goller
Academic Development, Accessibility and UDL, Constructivism, Course Design, DBER and SoTL, Discussions, Diversity, Information Literacy, Instructor Behaviors, Open Pedagogy, Pedagogy, Publishing, Reflections, Student groups, UDL, Undergraduate Research, Wellbeing, Why

Antiracist Opportunities

Chelsey Nardi from the University of Colorado Denver is a doctoral candidate and presented at JMBE on their article about antiracist opportunities. The overview Nardi presented summarized the article: Nardi focused in the recorded session on the finding that “active learning does not equal inclusive teaching.” She also mentioned that authentic research experienced with unpaid […]